How can you even suggest such a thing?? (grin)
I would agree that you do need to put a layer of plywood under the cement board if you are going over the hardwood. Locating the joists under the flooring so that you are fastening the plywood thru the flooring and into the joists would also help.
The thinset under the cement board is to fill voids and not to bond the cement baord down which is why you use unmodified.
If you choose to take up the flooring you might find this site helpful.
http://woodfloorist.com/1/takeupflooring.html
Franklyn
I Teach Wood Floors Online and Offline